MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Rickettsia massiliae MTU5 plasmid pRMA

Total Repeats: 127

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009897	GCA	2	6	29	34	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2	NC_009897	TAA	2	6	48	53	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_009897	AT	3	6	54	59	50 %	50 %	0 %	0 %	Non-Coding
4	NC_009897	A	6	6	2445	2450	100 %	0 %	0 %	0 %	Non-Coding
5	NC_009897	AAGT	2	8	2460	2467	50 %	25 %	25 %	0 %	Non-Coding
6	NC_009897	TCC	2	6	2502	2507	0 %	33.33 %	0 %	66.67 %	Non-Coding
7	NC_009897	A	7	7	2510	2516	100 %	0 %	0 %	0 %	Non-Coding
8	NC_009897	AAG	2	6	2522	2527	66.67 %	0 %	33.33 %	0 %	Non-Coding
9	NC_009897	TAA	2	6	2540	2545	66.67 %	33.33 %	0 %	0 %	Non-Coding
10	NC_009897	A	6	6	2547	2552	100 %	0 %	0 %	0 %	Non-Coding
11	NC_009897	AGCA	2	8	2613	2620	50 %	0 %	25 %	25 %	Non-Coding
12	NC_009897	AGT	2	6	2621	2626	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
13	NC_009897	AG	3	6	2651	2656	50 %	0 %	50 %	0 %	Non-Coding
14	NC_009897	ATC	2	6	2665	2670	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
15	NC_009897	TA	3	6	4626	4631	50 %	50 %	0 %	0 %	Non-Coding
16	NC_009897	TC	3	6	6225	6230	0 %	50 %	0 %	50 %	Non-Coding
17	NC_009897	T	6	6	6363	6368	0 %	100 %	0 %	0 %	Non-Coding
18	NC_009897	ACA	2	6	6371	6376	66.67 %	0 %	0 %	33.33 %	Non-Coding
19	NC_009897	AGG	2	6	6387	6392	33.33 %	0 %	66.67 %	0 %	Non-Coding
20	NC_009897	AGT	2	6	6418	6423	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
21	NC_009897	TAA	2	6	6445	6450	66.67 %	33.33 %	0 %	0 %	Non-Coding
22	NC_009897	TTAT	2	8	6458	6465	25 %	75 %	0 %	0 %	Non-Coding
23	NC_009897	TG	3	6	6475	6480	0 %	50 %	50 %	0 %	Non-Coding
24	NC_009897	TA	3	6	6584	6589	50 %	50 %	0 %	0 %	Non-Coding
25	NC_009897	TAC	2	6	6596	6601	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
26	NC_009897	CT	3	6	6629	6634	0 %	50 %	0 %	50 %	Non-Coding
27	NC_009897	TA	3	6	6653	6658	50 %	50 %	0 %	0 %	Non-Coding
28	NC_009897	CTT	2	6	6674	6679	0 %	66.67 %	0 %	33.33 %	Non-Coding
29	NC_009897	TGC	2	6	6702	6707	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
30	NC_009897	CAC	2	6	6753	6758	33.33 %	0 %	0 %	66.67 %	Non-Coding
31	NC_009897	TCT	2	6	6797	6802	0 %	66.67 %	0 %	33.33 %	Non-Coding
32	NC_009897	GT	3	6	6809	6814	0 %	50 %	50 %	0 %	Non-Coding
33	NC_009897	ATC	2	6	6850	6855	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
34	NC_009897	T	7	7	6886	6892	0 %	100 %	0 %	0 %	Non-Coding
35	NC_009897	TATT	2	8	6917	6924	25 %	75 %	0 %	0 %	Non-Coding
36	NC_009897	TATTCT	2	12	6927	6938	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
37	NC_009897	CAT	2	6	6983	6988	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
38	NC_009897	AT	3	6	7012	7017	50 %	50 %	0 %	0 %	Non-Coding
39	NC_009897	TAT	2	6	7019	7024	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_009897	TA	3	6	7061	7066	50 %	50 %	0 %	0 %	Non-Coding
41	NC_009897	CTT	2	6	7077	7082	0 %	66.67 %	0 %	33.33 %	Non-Coding
42	NC_009897	AT	3	6	7088	7093	50 %	50 %	0 %	0 %	Non-Coding
43	NC_009897	ATGATA	2	12	7280	7291	50 %	33.33 %	16.67 %	0 %	Non-Coding
44	NC_009897	TGT	2	6	7330	7335	0 %	66.67 %	33.33 %	0 %	Non-Coding
45	NC_009897	TATT	2	8	7354	7361	25 %	75 %	0 %	0 %	Non-Coding
46	NC_009897	TTAA	2	8	7406	7413	50 %	50 %	0 %	0 %	Non-Coding
47	NC_009897	TA	3	6	7422	7427	50 %	50 %	0 %	0 %	Non-Coding
48	NC_009897	TA	4	8	8047	8054	50 %	50 %	0 %	0 %	Non-Coding
49	NC_009897	A	6	6	8140	8145	100 %	0 %	0 %	0 %	Non-Coding
50	NC_009897	AGA	2	6	8157	8162	66.67 %	0 %	33.33 %	0 %	Non-Coding
51	NC_009897	AGA	2	6	9531	9536	66.67 %	0 %	33.33 %	0 %	Non-Coding
52	NC_009897	CAT	2	6	9588	9593	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
53	NC_009897	TACC	2	8	9609	9616	25 %	25 %	0 %	50 %	Non-Coding
54	NC_009897	T	6	6	9643	9648	0 %	100 %	0 %	0 %	Non-Coding
55	NC_009897	ACT	2	6	9694	9699	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
56	NC_009897	TAT	2	6	9747	9752	33.33 %	66.67 %	0 %	0 %	Non-Coding
57	NC_009897	AGA	2	6	9881	9886	66.67 %	0 %	33.33 %	0 %	Non-Coding
58	NC_009897	ATA	2	6	9931	9936	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_009897	T	6	6	9969	9974	0 %	100 %	0 %	0 %	Non-Coding
60	NC_009897	TGCT	2	8	10392	10399	0 %	50 %	25 %	25 %	Non-Coding
61	NC_009897	GAA	2	6	10436	10441	66.67 %	0 %	33.33 %	0 %	Non-Coding
62	NC_009897	TTTA	2	8	10449	10456	25 %	75 %	0 %	0 %	Non-Coding
63	NC_009897	TGAT	2	8	10460	10467	25 %	50 %	25 %	0 %	Non-Coding
64	NC_009897	AGGG	2	8	10477	10484	25 %	0 %	75 %	0 %	Non-Coding
65	NC_009897	TTG	2	6	10547	10552	0 %	66.67 %	33.33 %	0 %	Non-Coding
66	NC_009897	TTCA	2	8	10553	10560	25 %	50 %	0 %	25 %	Non-Coding
67	NC_009897	AT	3	6	10585	10590	50 %	50 %	0 %	0 %	Non-Coding
68	NC_009897	ATA	2	6	10599	10604	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_009897	ATTT	2	8	10635	10642	25 %	75 %	0 %	0 %	Non-Coding
70	NC_009897	ATA	2	6	10700	10705	66.67 %	33.33 %	0 %	0 %	Non-Coding
71	NC_009897	GGC	2	6	10729	10734	0 %	0 %	66.67 %	33.33 %	Non-Coding
72	NC_009897	CT	3	6	10739	10744	0 %	50 %	0 %	50 %	Non-Coding
73	NC_009897	TTA	2	6	10750	10755	33.33 %	66.67 %	0 %	0 %	Non-Coding
74	NC_009897	TA	3	6	10901	10906	50 %	50 %	0 %	0 %	Non-Coding
75	NC_009897	TTA	2	6	10914	10919	33.33 %	66.67 %	0 %	0 %	Non-Coding
76	NC_009897	TC	3	6	12322	12327	0 %	50 %	0 %	50 %	Non-Coding
77	NC_009897	A	6	6	12338	12343	100 %	0 %	0 %	0 %	Non-Coding
78	NC_009897	TTAT	2	8	12344	12351	25 %	75 %	0 %	0 %	Non-Coding
79	NC_009897	ATTG	2	8	12359	12366	25 %	50 %	25 %	0 %	Non-Coding
80	NC_009897	CAT	2	6	12392	12397	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
81	NC_009897	T	6	6	12404	12409	0 %	100 %	0 %	0 %	Non-Coding
82	NC_009897	CA	3	6	12450	12455	50 %	0 %	0 %	50 %	Non-Coding
83	NC_009897	AGT	2	6	12489	12494	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
84	NC_009897	TAA	2	6	12522	12527	66.67 %	33.33 %	0 %	0 %	Non-Coding
85	NC_009897	TTATC	2	10	12543	12552	20 %	60 %	0 %	20 %	Non-Coding
86	NC_009897	ATTA	2	8	12557	12564	50 %	50 %	0 %	0 %	Non-Coding
87	NC_009897	TGG	2	6	12609	12614	0 %	33.33 %	66.67 %	0 %	Non-Coding
88	NC_009897	CTT	3	9	12617	12625	0 %	66.67 %	0 %	33.33 %	Non-Coding
89	NC_009897	T	6	6	12687	12692	0 %	100 %	0 %	0 %	Non-Coding
90	NC_009897	TAG	2	6	12758	12763	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
91	NC_009897	TAT	2	6	12766	12771	33.33 %	66.67 %	0 %	0 %	Non-Coding
92	NC_009897	TTA	2	6	12833	12838	33.33 %	66.67 %	0 %	0 %	Non-Coding
93	NC_009897	T	7	7	12928	12934	0 %	100 %	0 %	0 %	Non-Coding
94	NC_009897	ATG	2	6	12935	12940	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
95	NC_009897	CTA	2	6	13039	13044	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
96	NC_009897	ATT	2	6	13045	13050	33.33 %	66.67 %	0 %	0 %	Non-Coding
97	NC_009897	TATT	2	8	13074	13081	25 %	75 %	0 %	0 %	Non-Coding
98	NC_009897	TAT	2	6	13189	13194	33.33 %	66.67 %	0 %	0 %	Non-Coding
99	NC_009897	AT	3	6	13228	13233	50 %	50 %	0 %	0 %	Non-Coding
100	NC_009897	GT	3	6	13238	13243	0 %	50 %	50 %	0 %	Non-Coding
101	NC_009897	ACAT	2	8	13785	13792	50 %	25 %	0 %	25 %	Non-Coding
102	NC_009897	TAC	2	6	13825	13830	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
103	NC_009897	TAA	2	6	13910	13915	66.67 %	33.33 %	0 %	0 %	Non-Coding
104	NC_009897	TTAAG	2	10	13925	13934	40 %	40 %	20 %	0 %	Non-Coding
105	NC_009897	AT	4	8	13945	13952	50 %	50 %	0 %	0 %	Non-Coding
106	NC_009897	TA	3	6	13956	13961	50 %	50 %	0 %	0 %	Non-Coding
107	NC_009897	ATT	2	6	13983	13988	33.33 %	66.67 %	0 %	0 %	Non-Coding
108	NC_009897	CCTC	2	8	14002	14009	0 %	25 %	0 %	75 %	Non-Coding
109	NC_009897	GCC	2	6	14013	14018	0 %	0 %	33.33 %	66.67 %	Non-Coding
110	NC_009897	TTG	2	6	14084	14089	0 %	66.67 %	33.33 %	0 %	Non-Coding
111	NC_009897	AGT	2	6	14132	14137	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
112	NC_009897	T	7	7	14139	14145	0 %	100 %	0 %	0 %	Non-Coding
113	NC_009897	T	6	6	14153	14158	0 %	100 %	0 %	0 %	Non-Coding
114	NC_009897	ATT	2	6	14845	14850	33.33 %	66.67 %	0 %	0 %	Non-Coding
115	NC_009897	T	6	6	14853	14858	0 %	100 %	0 %	0 %	Non-Coding
116	NC_009897	ATA	2	6	14864	14869	66.67 %	33.33 %	0 %	0 %	Non-Coding
117	NC_009897	AT	3	6	14873	14878	50 %	50 %	0 %	0 %	Non-Coding
118	NC_009897	ACAT	2	8	14881	14888	50 %	25 %	0 %	25 %	Non-Coding
119	NC_009897	ACAT	2	8	14919	14926	50 %	25 %	0 %	25 %	Non-Coding
120	NC_009897	AT	4	8	14925	14932	50 %	50 %	0 %	0 %	Non-Coding
121	NC_009897	AT	4	8	14937	14944	50 %	50 %	0 %	0 %	Non-Coding
122	NC_009897	ATT	2	6	14969	14974	33.33 %	66.67 %	0 %	0 %	Non-Coding
123	NC_009897	T	6	6	14973	14978	0 %	100 %	0 %	0 %	Non-Coding
124	NC_009897	ATT	2	6	14991	14996	33.33 %	66.67 %	0 %	0 %	Non-Coding
125	NC_009897	GAA	2	6	15065	15070	66.67 %	0 %	33.33 %	0 %	Non-Coding
126	NC_009897	TAAA	2	8	15208	15215	75 %	25 %	0 %	0 %	Non-Coding
127	NC_009897	A	6	6	15231	15236	100 %	0 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.